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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35635881_35636775_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35635881 - 35636775
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCGGTTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TGTTCTTTAAGT
Flanking Amino Acid:
LLEALTVAITVSFYDVSIVL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
78.4
0.64
0.9
72.4
37.8
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
75.5
0.88
1.6
88.47
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014365
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014992
35634040 - 35641476
7437