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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35638445_35639764_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35638445 - 35639764
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TGAAACTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATG
Flanking Amino Acid:
STGVQAFVHERPALLLISVF
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
70
0.45
1
61.5
44
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
78
0.74
1.1
78.3
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014365
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014992
35634040 - 35641476
7437