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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35681573_35681769_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
35681573 - 35681769
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATATCGT
5'SS Class:
major
3'SS Sequence:
GGATTTTCCTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GATTGAA
U12 Branch Point Sequence:
ACTGATTGAAGG
Flanking Amino Acid:
DILHYVLKSGRSVGLPKWNC
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
67.7
43.2
Major BPS
61.6
0.29
1.2
55.4
42
Major PPT
50.5
0.01
1.7
62
44.2
Minor 5ss
41.4
-1
3
59.1
45.4
Minor BPS
41.5
-0.7
1.9
42.92
42.6

Associated Gene:

Gene:
HELB
Ensembl Gene ID:
ENSAPLG00000014085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014687
35679849 - 35690879
11031