Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35681811_35683714_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

35681811 - 35683714

Intron Length:

1904

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGT|GCAAAGACA

5'SS Class:

weak_major

3'SS Sequence:

GCAGGCAAGGCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGTTTAT

U12 Branch Point Sequence:

TCTTGGTTTATG

Flanking Amino Acid:

LPKWNCLCYRLLVALTFPMI

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.1

0.05

1.4

60.5

37.8

Major BPS

63.5

0.34

1.4

57.4

49.1

Major PPT

47.5

-0.1

1.1

36.4

39.4

Minor 5ss

23.6

-3

32.2

42.2

Minor BPS

42.7

-0.7

2.6

54.54

Associated Gene:

Gene:

HELB

Ensembl Gene ID:

ENSAPLG00000014085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014687

35679849 - 35690879

11031