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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35683924_35685254_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
35683924 - 35685254
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGGGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
NEPWKLGFNRKITYRELKLS
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
55.1
0.12
1.8
68.6
42.1
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
HELB
Ensembl Gene ID:
ENSAPLG00000014085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014687
35679849 - 35690879
11031