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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35690516_35690650_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35690516 - 35690650
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTCTGACCT
Flanking Amino Acid:
CCQHYSKHLTRDHKRRLLFQ
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
38.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
68.3
0.41
0.9
62
39
Minor 5ss
43.2
-0.7
2.9
55
49.2
Minor BPS
60.1
0.4
1.8
82.07
39.1

Associated Gene:

Gene:
HELB
Ensembl Gene ID:
ENSAPLG00000014085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014687
35679849 - 35690879
11031