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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35706361_35709884_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35706361 - 35709884
Intron Length:
3524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTAAATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CCTTTTTTAACC
Flanking Amino Acid:
DEEWDRPTASSFAGTHDNTE
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
62.9
0.29
1
53.7
44.7
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
72.5
0.69
1.2
72.92
38.9

Associated Gene:

Gene:
GRIP1
Ensembl Gene ID:
ENSAPLG00000013466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014044
35695555 - 35799392
103838