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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35735752_35736476_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35735752 - 35736476
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAATGTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTACAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GATTTCTTACAG
Flanking Amino Acid:
FQKTSPQKSLPLVSSSFSPT
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.3
59.4
40.4
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
78.6
0.64
0.9
75.5
32.8
Minor 5ss
42.9
-0.8
3.3
59.5
39.8
Minor BPS
52.2
-0
1.8
58.32
42.9

Associated Gene:

Gene:
GRIP1
Ensembl Gene ID:
ENSAPLG00000013466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014044
35695555 - 35799392
103838