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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3574970_3585477_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3574970 - 3585477
Intron Length:
10508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTTATC
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GTTAACATAACC
Flanking Amino Acid:
DSTMLSKILAVKRFKEPKEE
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
74.3
36
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
89.8
0.89
0.7
84.7
30.1
Minor 5ss
33.8
-1.8
3
45.5
42.6
Minor BPS
55.6
0.15
1.9
70.69
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025282
3574867 - 3600632
25766
ENSAPLT00000015242
3574867 - 3606402
31536