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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35766529_35767500_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35766529 - 35767500
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TTTTCTCTCACT
Flanking Amino Acid:
EGNTFGFVIRGGAHDDRNKS
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
62.9
0.49
2.1
88.42
36.8

Associated Gene:

Gene:
GRIP1
Ensembl Gene ID:
ENSAPLG00000013466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014044
35695555 - 35799392
103838