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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35771255_35772151_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35771255 - 35772151
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACCACA
5'SS Class:
major
3'SS Sequence:
TGCTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTGTTTTTAACA
Flanking Amino Acid:
SNLRQGGIAARSDQLDVGDY
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
71.6
40.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.7
0.69
0.7
80.4
31.6
Minor 5ss
45.2
-0.5
2.6
58.9
45.3
Minor BPS
72.6
0.7
1.2
74.03
38.5

Associated Gene:

Gene:
GRIP1
Ensembl Gene ID:
ENSAPLG00000013466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038134
35693300 - 35775711
82412
ENSAPLT00000018771
35693300 - 35776941
83642
ENSAPLT00000014044
35695555 - 35799392
103838