About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35772288_35775680_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35772288 - 35775680
Intron Length:
3393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATCTGAT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATTTAATA
Flanking Amino Acid:
HGAVLQEWRAEEFKGSTIVE
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.39
1.2
65.3
40.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.2
0.77
0.8
81.3
29.2
Minor 5ss
46.5
-0.4
3
66.4
45.1
Minor BPS
67.4
0.54
1.5
77
33.7

Associated Gene:

Gene:
GRIP1
Ensembl Gene ID:
ENSAPLG00000013466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038134
35693300 - 35775711
82412