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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35796966_35799340_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35796966 - 35799340
Intron Length:
2375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
TGTTTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCAGTAACT
Flanking Amino Acid:
SVSCRICQLVYESPYTKSAN
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
76.2
32.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.3
0.64
0.9
77.7
36.7
Minor 5ss
38.8
-1.3
3.2
53.5
43.7
Minor BPS
61.1
0.43
2.3
86.33
39.2

Associated Gene:

Gene:
GRIP1
Ensembl Gene ID:
ENSAPLG00000013466
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014044
35695555 - 35799392
103838