Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3588922_3597581_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3588922 - 3597581

Intron Length:

8660

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGGGTC

5'SS Class:

major

3'SS Sequence:

CTGTTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCAGAT

U12 Branch Point Sequence:

TGTGTCAGATGC

Flanking Amino Acid:

KYTYLVFGEYGDPPQAAAWI

Intron Amino Acid Position:

124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

67.8

37.4

Major BPS

56.4

0.16

1.3

54.7

43.1

Major PPT

87.5

0.84

0.8

80.3

37.3

Minor 5ss

32.5

-2

3.9

45.5

44.5

Minor BPS

37.7

-0.9

48.26

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014632

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015242

3574867 - 3606402

31536

ENSAPLT00000025282

3574867 - 3600632

25766