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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35977948_36010133_R

Intron Information:

Intron Rank:
136515
Intron Class:
major
Intron Phase:
Intron Coordinates:
35977948 - 36010133
Intron Length:
32186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
CTGTGCTCGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTGTCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
67.3
0.39
1
65.8
41
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
67.8
0.64
1.5
84.15
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020879
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039095
35976763 - 36010211
33449