Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3598508_3600308_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3598508 - 3600308

Intron Length:

1801

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTCCCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTTAT

U12 Branch Point Sequence:

ATTTATGCAACT

Flanking Amino Acid:

VMLVVPFIVNAIMFWVVDSL

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.1

24.7

Major BPS

79.9

0.74

0.9

69.7

37.1

Major PPT

66.1

0.36

31.5

Minor 5ss

44.3

-0.6

2.9

62.8

Minor BPS

47.9

-0

2.3

75.58

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014632

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025282

3574867 - 3600632

25766

ENSAPLT00000015242

3574867 - 3606402

31536