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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36055262_36059019_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36055262 - 36059019
Intron Length:
3758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAGCC
5'SS Class:
major
3'SS Sequence:
TCTCTTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTAGCAATAATT
Flanking Amino Acid:
EKMTSSDKDFRFMATNDLMT
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
63.2
36.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
82.8
0.74
0.9
83.9
31.1
Minor 5ss
24.9
-2.9
3.3
32.9
42.4
Minor BPS
51.5
0.12
2
75.18
41.3

Associated Gene:

Gene:
CAND1
Ensembl Gene ID:
ENSAPLG00000012973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013552
36055142 - 36083103
27962