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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36059164_36070777_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36059164 - 36070777
Intron Length:
11614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTTGTTTATAC
Flanking Amino Acid:
NGEVQNLAVKCLGPLVSKVK
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
85.3
31.1
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
85.1
0.79
0.9
80.6
36.1
Minor 5ss
47.9
-0.2
2.5
65.4
40.1
Minor BPS
51.9
0.04
2.1
71.15
40.4

Associated Gene:

Gene:
CAND1
Ensembl Gene ID:
ENSAPLG00000012973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013552
36055142 - 36083103
27962