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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36070933_36072462_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36070933 - 36072462
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTGTTGTACT
Flanking Amino Acid:
VIGELPPASSGSALAANVCK
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.2
43
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.7
0.65
0.9
74.4
40.4
Minor 5ss
33.1
-1.9
3.2
43.9
43.7
Minor BPS
51
0.11
2.2
80.58
41.3

Associated Gene:

Gene:
CAND1
Ensembl Gene ID:
ENSAPLG00000012973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013552
36055142 - 36083103
27962