Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36072587_36073005_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36072587 - 36073005

Intron Length:

419

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACGTC

5'SS Class:

strong_major

3'SS Sequence:

TGTCTGTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTCAAT

U12 Branch Point Sequence:

ATTGGTTTGAGT

Flanking Amino Acid:

ALDIMADMLSRQGGLLVNFH

Intron Amino Acid Position:

164

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

36.9

Major BPS

68.1

0.45

1.3

76.8

34.3

Major PPT

71.9

0.49

1.1

75.1

38.8

Minor 5ss

40.3

-1.1

3.5

58.3

46.6

Minor BPS

-0.1

2.1

68.38

43.3

Associated Gene:

Gene:

CAND1

Ensembl Gene ID:

ENSAPLG00000012973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013552

36055142 - 36083103

27962