About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36073263_36073342_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36073263 - 36073342
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TATTCTTTTATC
Flanking Amino Acid:
AISRQAGHRIGEYLEKIIPL
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
79.2
0.72
1
75
40
Major PPT
82.2
0.73
0.9
82.1
33.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
67.2
0.52
1.5
75.04
35.9

Associated Gene:

Gene:
CAND1
Ensembl Gene ID:
ENSAPLG00000012973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013552
36055142 - 36083103
27962