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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36073449_36073891_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36073449 - 36073891
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTACTATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTACTTTTATT
Flanking Amino Acid:
CIQAFESFVRRCPKEVYPHV
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.6
96.1
12.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
75.9
0.58
1
70.4
40
Minor 5ss
37.4
-1.4
2.8
50.6
45.9
Minor BPS
66.6
0.6
1.6
84.49
36.1

Associated Gene:

Gene:
CAND1
Ensembl Gene ID:
ENSAPLG00000012973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013552
36055142 - 36083103
27962