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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36074038_36075110_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36074038 - 36075110
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TAGATTTGAACA
Flanking Amino Acid:
DADGGDDDDQGSDDEYSDDD
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
81
0.7
0.9
87.2
23.8
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
53.9
0.12
1.4
61.71
38.3

Associated Gene:

Gene:
CAND1
Ensembl Gene ID:
ENSAPLG00000012973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013552
36055142 - 36083103
27962