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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36078355_36079748_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36078355 - 36079748
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
LPRLKGYLASGSSYARSSVV
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.9
0.51
0.9
72.6
37.2
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
CAND1
Ensembl Gene ID:
ENSAPLG00000012973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013552
36055142 - 36083103
27962