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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36079845_36081101_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36079845 - 36081101
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TACACAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TGTTTCTGTACA
Flanking Amino Acid:
PIDPLLKNCIGDFLKTLEDP
Intron Amino Acid Position:
1009

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
67.6
0.4
1
59.4
40.3
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
58.3
0.26
1.8
72.65
38.6

Associated Gene:

Gene:
CAND1
Ensembl Gene ID:
ENSAPLG00000012973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013552
36055142 - 36083103
27962