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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36081272_36081373_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36081272 - 36081373
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
AATTTGCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTAACTTTAATT
Flanking Amino Acid:
TKVRKELIREVEMGPFKHTV
Intron Amino Acid Position:
1066

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
66.3
0.37
1
59.8
40.8
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
76.1
0.9
1.1
85.55
34.5

Associated Gene:

Gene:
CAND1
Ensembl Gene ID:
ENSAPLG00000012973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013552
36055142 - 36083103
27962