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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36081539_36081761_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36081539 - 36081761
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCTGT
5'SS Class:
major
3'SS Sequence:
TCTCTCAAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTTCTCTCAAAC
Flanking Amino Acid:
DGLKDHYDIKMLTFLMLVRL
Intron Amino Acid Position:
1121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
70.9
41.9
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
62.9
0.29
1
57
37.7
Minor 5ss
41.9
-0.9
2.9
57.2
46.9
Minor BPS
60.7
0.31
1.6
73.49
36.7

Associated Gene:

Gene:
CAND1
Ensembl Gene ID:
ENSAPLG00000012973
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013552
36055142 - 36083103
27962