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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36107784_36132026_F

Intron Information:

Intron Rank:
124692
Intron Class:
major
Intron Phase:
Intron Coordinates:
36107784 - 36132026
Intron Length:
24243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATGTTATCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
87.9
0.85
0.7
80.6
31.4
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
48.7
-0
1.9
69.08
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017206
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038456
36107619 - 36133307
25689