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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36179443_36187660_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36179443 - 36187660
Intron Length:
8218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
TTTCCAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTTGTTAACT
Flanking Amino Acid:
PLRASNASHTVGGSKHTMNE
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.7
43.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.9
0.72
0.8
78.7
33.3
Minor 5ss
34.7
-1.7
2.8
42
44.3
Minor BPS
68.1
0.65
2.1
86.99
39.2

Associated Gene:

Gene:
DYRK2
Ensembl Gene ID:
ENSAPLG00000001626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001616
36178888 - 36189262
10375