About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36343105_36343467_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36343105 - 36343467
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTTTCAACA
Flanking Amino Acid:
FIEKVKNWTERNEKRIILSQ
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.4
0.71
0.9
78
34.9
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
67.8
0.55
1.4
76.36
34.5

Associated Gene:

Gene:
IFNG
Ensembl Gene ID:
ENSAPLG00000012876
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013404
36341347 - 36345593
4247