About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36343537_36345470_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36343537 - 36345470
Intron Length:
1934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
GTATGTATAACA
Flanking Amino Acid:
NDIDKLKADFNASNSDVADG
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
84.9
0.78
0.8
80.1
31.9
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
49.9
-0
2
65.94
40.2

Associated Gene:

Gene:
IFNG
Ensembl Gene ID:
ENSAPLG00000012876
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013404
36341347 - 36345593
4247