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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3636826_3637319_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3636826 - 3637319
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CATTCCTAAATT
Flanking Amino Acid:
NRELSVGDIQILNGYFVHYF
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.2
0.72
0.8
76.3
32
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
68.6
0.66
1.7
80.78
41.5

Associated Gene:

Gene:
ITIH5
Ensembl Gene ID:
ENSAPLG00000014292
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024710
3589265 - 3656221
66957
ENSAPLT00000014887
3609058 - 3656221
47164