Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36369117_36373619_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36369117 - 36373619

Intron Length:

4503

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTGAGTATA

5'SS Class:

major

3'SS Sequence:

CTCATCCCTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTCTTCTCATCC

Flanking Amino Acid:

QVLQENMNACLPCAPSTRLT

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.55

1.1

76.1

34.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

77.3

0.61

0.8

73.5

31.4

Minor 5ss

35.9

-1.6

2.9

43.1

43.9

Minor BPS

56.4

0.18

1.8

69.92

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026064

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026260

36368276 - 36376023

7748