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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36373752_36375170_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36373752 - 36375170
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGCTGCTTACCT
Flanking Amino Acid:
LKKTTKVLFMTNCSVRDQVL
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
83.3
29.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.9
80.2
37.3
Minor 5ss
44
-0.6
3.2
62.3
43.4
Minor BPS
52.2
0.15
2.1
70.74
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026064
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026260
36368276 - 36376023
7748