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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36393290_36393369_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
36393290 - 36393369
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTCTCCCTGATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
78.7
0.65
0.8
78.2
29
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
59.7
0.16
1.8
67.18
41

Associated Gene:

Gene:
IL22
Ensembl Gene ID:
ENSAPLG00000012808
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013329
36390466 - 36393438
2973