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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36405466_36407715_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36405466 - 36407715
Intron Length:
2250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTC
5'SS Class:
major
3'SS Sequence:
CTTTCCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTTTCCCCAACA
Flanking Amino Acid:
PLQERNYNDEDDRLSQISAR
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.7
39.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.4
0.57
0.8
70.4
29.1
Minor 5ss
44.9
-0.5
2.8
62
42.6
Minor BPS
61.3
0.35
1.9
76.63
40.3

Associated Gene:

Gene:
MDM1
Ensembl Gene ID:
ENSAPLG00000012567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023880
36404512 - 36429483
24972
ENSAPLT00000013099
36404512 - 36429483
24972
ENSAPLT00000045679
36404512 - 36429483
24972