About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36409443_36409569_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36409443 - 36409569
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAAAGA
5'SS Class:
major
3'SS Sequence:
TCCACTACAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTCATT
Flanking Amino Acid:
THHDLTTPAVGGAVLVSPPK
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
66.8
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
60.3
0.23
0.9
55.4
33.6
Minor 5ss
32.3
-2
3
37.4
41.9
Minor BPS
61.3
0.44
1.7
79.64
37.1

Associated Gene:

Gene:
MDM1
Ensembl Gene ID:
ENSAPLG00000012567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045679
36404512 - 36429483
24972
ENSAPLT00000023880
36404512 - 36429483
24972
ENSAPLT00000013099
36404512 - 36429483
24972