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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36413769_36418358_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36413769 - 36418358
Intron Length:
4590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TGCAACTTAACG
Flanking Amino Acid:
SRIRSKVPNQVRELRARAKA
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
75.2
0.57
1
69.5
40.7
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
59.7
0.17
1.7
62.23
44.9

Associated Gene:

Gene:
MDM1
Ensembl Gene ID:
ENSAPLG00000012567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045679
36404512 - 36429483
24972