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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36418459_36420420_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36418459 - 36420420
Intron Length:
1962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTTGATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTCCCCCATCC
Flanking Amino Acid:
QKPLSLRTNRGKMNTEYRSK
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.7
35.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
71
0.47
1
67.2
43.4
Minor 5ss
45
-0.5
2.5
51.2
45.5
Minor BPS
48.2
-0.1
2.1
69.45
41.4

Associated Gene:

Gene:
MDM1
Ensembl Gene ID:
ENSAPLG00000012567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023880
36404512 - 36429483
24972
ENSAPLT00000013099
36404512 - 36429483
24972
ENSAPLT00000045679
36404512 - 36429483
24972