About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36426421_36428824_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36426421 - 36428824
Intron Length:
2404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAA
U12 Branch Point Sequence:
TTTAGTTCAACC
Flanking Amino Acid:
QWAGLRSDQLGITREPNFIS
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
53.5
0.09
2
71.24
40.1

Associated Gene:

Gene:
MDM1
Ensembl Gene ID:
ENSAPLG00000012567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013099
36404512 - 36429483
24972
ENSAPLT00000045679
36404512 - 36429483
24972
ENSAPLT00000023880
36404512 - 36429483
24972