About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36520955_36522336_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36520955 - 36522336
Intron Length:
1382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTTACAAGAACT
Flanking Amino Acid:
GSGGVGKSALTVQFVQGIFV
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
47.7
-0.1
2
72.4
43.5

Associated Gene:

Gene:
RAP1B
Ensembl Gene ID:
ENSAPLG00000012353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012899
36520870 - 36531844
10975