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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36529415_36531728_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36529415 - 36531728
Intron Length:
2314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTATATTCACA
Flanking Amino Acid:
SAKSKINVNEIFYDLVRQIN
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
82.3
0.73
0.8
76.8
36.3
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
52.3
0.07
2.1
72.9
38.8

Associated Gene:

Gene:
RAP1B
Ensembl Gene ID:
ENSAPLG00000012353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012899
36520870 - 36531844
10975