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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36541242_36541346_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36541242 - 36541346
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGGAC
5'SS Class:
major
3'SS Sequence:
CGCTGTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTTTGCTGACTC
Flanking Amino Acid:
KEPGGSGAMERSGFGELLSP
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.7
36.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
78.3
0.64
0.9
71.9
38
Minor 5ss
23
-3.1
3.4
31.1
43.3
Minor BPS
47.3
-0.2
2.1
62.53
43.6

Associated Gene:

Gene:
NUP107
Ensembl Gene ID:
ENSAPLG00000011758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012333
36541138 - 36569685
28548