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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36543185_36546140_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36543185 - 36546140
Intron Length:
2956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGACTT
5'SS Class:
major
3'SS Sequence:
CTCTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTTTTCAGAAAA
Flanking Amino Acid:
RTPCSLLRQPLTSLSRSAMK
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.3
75.5
40.6
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
83.2
0.75
0.8
80.3
31.8
Minor 5ss
39.3
-1.2
3.3
56.8
40.8
Minor BPS
49.9
-0
1.8
67.51
37.9

Associated Gene:

Gene:
NUP107
Ensembl Gene ID:
ENSAPLG00000011758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012333
36541138 - 36569685
28548
ENSAPLT00000039114
36541138 - 36569685
28548