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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36548916_36549769_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36548916 - 36549769
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTACCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATTTATTTACCT
Flanking Amino Acid:
DEYESICNSQVNILGKIVYR
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
80
0.67
0.8
78.6
34.4
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
63.6
0.5
1.8
83.17
37.9

Associated Gene:

Gene:
NUP107
Ensembl Gene ID:
ENSAPLG00000011758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039114
36541138 - 36569685
28548
ENSAPLT00000012333
36541138 - 36569685
28548