About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36550270_36551483_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36550270 - 36551483
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTCTTAAAT
Flanking Amino Acid:
LEDETAFELMPLNASEKTNI
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.5
41.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.2
0.59
0.9
74.6
34
Minor 5ss
47.6
-0.2
2.8
61.4
44.4
Minor BPS
84.8
1.17
1.1
97.05
26.9

Associated Gene:

Gene:
NUP107
Ensembl Gene ID:
ENSAPLG00000011758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012333
36541138 - 36569685
28548
ENSAPLT00000039114
36541138 - 36569685
28548