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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36551556_36552039_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36551556 - 36552039
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
CCTATCATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ATGTCTTAAAAA
Flanking Amino Acid:
QKDSFVRQSQMVVDWLESIA
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
75.7
0.58
0.9
66
39.5
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
56.1
0.19
1.8
66.61
40

Associated Gene:

Gene:
NUP107
Ensembl Gene ID:
ENSAPLG00000011758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039114
36541138 - 36569685
28548
ENSAPLT00000012333
36541138 - 36569685
28548