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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36559992_36560107_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36559992 - 36560107
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTACTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCTAC
U12 Branch Point Sequence:
TTTCTCCTACTT
Flanking Amino Acid:
EELPREYLETNWTSEKVFEE
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
48.6
-0
1.2
47.8
37.3
Major PPT
70.7
0.47
1
71
33.3
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
52.2
0.15
1.9
77.59
39.1

Associated Gene:

Gene:
NUP107
Ensembl Gene ID:
ENSAPLG00000011758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039114
36541138 - 36569685
28548
ENSAPLT00000012333
36541138 - 36569685
28548