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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36564717_36565251_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36564717 - 36565251
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATACTTTTAACC
Flanking Amino Acid:
HHCLELAREAGLDVAAITKT
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
66.8
0.38
0.9
59.9
40.1
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
67.9
0.54
1.2
70.76
33.8

Associated Gene:

Gene:
NUP107
Ensembl Gene ID:
ENSAPLG00000011758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039114
36541138 - 36569685
28548
ENSAPLT00000012333
36541138 - 36569685
28548