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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_36567245_36567968_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36567245 - 36567968
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
CTCGCAGCAAAT
Flanking Amino Acid:
AHEHKEKKYEVDYGIWKGLL
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
85.2
0.79
0.9
80.8
36.8
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
37.4
-0.8
2.3
54.14
47

Associated Gene:

Gene:
NUP107
Ensembl Gene ID:
ENSAPLG00000011758
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039114
36541138 - 36569685
28548
ENSAPLT00000012333
36541138 - 36569685
28548